STRINGSTRING
PFL_1990 PFL_1990 PFL_1989 PFL_1989 PFL_1988 PFL_1988 PFL_1227 PFL_1227 PFL_2018 PFL_2018 hol hol PFL_1991 PFL_1991
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1990Conserved hypothetical protein. (114 aa)    
Predicted Functional Partners:
PFL_1989
Identified by match to protein family HMM PF05272.
       0.797
PFL_1988
Conserved hypothetical protein.
       0.488
PFL_1227
Putative pyocin R, lytic enzyme; Identified by match to protein family HMM PF00182.
   
    0.453
PFL_2018
Putative pyocin R, lytic enzyme; Identified by match to protein family HMM PF00182.
   
    0.453
hol
Pyocin R2, holin; Identified by similarity to GB:BAA83136.1.
   
  
 0.451
PFL_1991
Pyocin R2, holin family protein; Identified by similarity to GB:BAA83136.1.
   
  
 0.451
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.