STRINGSTRING
PFL_2005 PFL_2005 PFL_2006 PFL_2006 PFL_2004 PFL_2004 PFL_2007 PFL_2007 PFL_2010 PFL_2010 PFL_2009 PFL_2009 PFL_2014 PFL_2014 PFL_2015 PFL_2015 PFL_2002 PFL_2002 PFL_2017 PFL_2017 PFL_1997 PFL_1997
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2005Baseplate J-like protein; Identified by match to protein family HMM PF04865. (293 aa)    
Predicted Functional Partners:
PFL_2006
Phage tail protein I; Identified by similarity to SP:P26701; match to protein family HMM PF09684; match to protein family HMM TIGR01634.
 
 
 0.996
PFL_2004
Hypothetical protein; Identified by glimmer; putative.
 
 
 0.995
PFL_2007
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.989
PFL_2010
Phage major tail tube protein; Identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611.
 
 
 0.989
PFL_2009
Phage tail sheath protein; Identified by match to protein family HMM PF04984.
 
   0.988
PFL_2014
Tail formation protein, phage P2 GpU; Identified by match to protein family HMM PF06995.
 
 
 0.988
PFL_2015
Identified by match to protein family HMM PF05489.
 
 
 0.987
PFL_2002
Phage baseplate assembly V family protein; Identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644.
 
  
 0.984
PFL_2017
Tail protein D; Identified by match to protein family HMM PF05954.
 
  
 0.959
PFL_1997
Conserved hypothetical protein.
 
   0.953
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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