STRINGSTRING
PFL_2031 PFL_2031 PFL_2032 PFL_2032 PFL_5495 PFL_5495 PFL_5494 PFL_5494 PFL_2028 PFL_2028 PFL_2024 PFL_2024 PFL_2030 PFL_2030 PFL_2026 PFL_2026 PFL_2029 PFL_2029 PFL_2025 PFL_2025 PFL_1621 PFL_1621
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2031ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (424 aa)    
Predicted Functional Partners:
PFL_2032
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.990
PFL_5495
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.958
PFL_5494
Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.910
PFL_2028
Glycosyltransferase, group 1 family domain/glycosyl transferase, group 2 family domain protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.
 
 
 0.900
PFL_2024
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
   
 0.796
PFL_2030
Conserved hypothetical protein.
       0.778
PFL_2026
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.
 
 
 0.776
PFL_2029
Conserved hypothetical protein.
       0.773
PFL_2025
Conserved hypothetical protein.
 
 
 
 0.651
PFL_1621
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
 
 
 
 0.569
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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