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PFL_2048 PFL_2048 PFL_2047 PFL_2047 PFL_0259 PFL_0259 PFL_4125 PFL_4125 emrB emrB PFL_0142 PFL_0142 PFL_1537 PFL_1537 PFL_2315 PFL_2315 macB1 macB1 macB2 macB2 PFL_2540 PFL_2540
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2048Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529. (367 aa)    
Predicted Functional Partners:
PFL_2047
Drug resistance MFS transporter, drug:H+ antiporter-2 family; Identified by similarity to SP:P0AEJ0; match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
 
 
 0.964
PFL_0259
Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
 
 
 0.847
PFL_4125
Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
 
 
 0.846
emrB
Identified by similarity to SP:P0AEJ0; match to protein family HMM PF07690; match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
 
 
 0.836
PFL_0142
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
 
 0.813
PFL_1537
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
 
 
 0.681
PFL_2315
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
 
 
 0.618
macB1
Efflux ABC transporter, permease/ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.602
macB2
Efflux ABC transporter, ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.602
PFL_2540
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
 
 
 0.596
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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