STRINGSTRING
PFL_2090 PFL_2090 chiC chiC PFL_4904 PFL_4904 PFL_2092 PFL_2092 PFL_6204 PFL_6204 PFL_5874 PFL_5874 PFL_1219 PFL_1219 PFL_3764 PFL_3764 pueB pueB PFL_0468 PFL_0468 PFL_0392 PFL_0392
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2090Chitin-binding protein; Identified by similarity to GB:BAA31569.1; match to protein family HMM PF03067. (209 aa)    
Predicted Functional Partners:
chiC
Chitinase; Identified by similarity to GB:AAK69491.1; similarity to GB:BAA76623.1; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.964
PFL_4904
Conserved hypothetical protein.
  
     0.694
PFL_2092
Conserved hypothetical protein.
 
     0.668
PFL_6204
Conserved hypothetical protein.
  
   
 0.660
PFL_5874
Conserved hypothetical protein.
  
     0.648
PFL_1219
Putative phage tail protein.
  
     0.584
PFL_3764
Phage head morphogenesis protein, SPP1 gp7 family; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
  
     0.582
pueB
Identified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
  
   
 0.575
PFL_0468
Transporter, CPA2 family; Identified by match to protein family HMM PF00999.
  
     0.569
PFL_0392
Conserved hypothetical protein.
  
     0.558
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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