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rbsD rbsD rbsK rbsK rbsC rbsC rbsB rbsB rbsA rbsA PFL_2595 PFL_2595 PFL_2593 PFL_2593 PFL_2594 PFL_2594 PFL_3664 PFL_3664 rbsR rbsR rihA rihA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rbsDD-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (134 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.985
rbsC
Ribose ABC transporter, permease protein; Identified by similarity to SP:P0AGI1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.983
rbsB
Ribose ABC transporter, periplasmic ribose-binding protein; Identified by similarity to SP:P02925; match to protein family HMM PF00532.
 
  
 0.971
rbsA
Ribose ABC transporter, ATP-binding protein; Based on sequence similarity with rbsA from E. coli (SP:P04983); identified by match to protein family HMM PF00005.
 
  
 0.970
PFL_2595
Ribose ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.937
PFL_2593
Putative ribose ABC transporter, periplasmic ribose-binding protein; Identified by match to protein family HMM PF00532.
 
  
 0.927
PFL_2594
Ribose ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
 
  
 0.904
PFL_3664
Periplasmic sugar-binding domain protein/LacI transcriptional regulator; Identified by match to protein family HMM PF00532.
 
  
 0.895
rbsR
Ribose operon repressor; Identified by sequence similarity with rbsR from E. coli (SP:P0ACQ0); identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
  
 0.839
rihA
Pyrimidine-specific ribonucleoside hydrolase RihA; Identified by similarity to SP:P41409; match to protein family HMM PF01156; Belongs to the IUNH family.
     
 0.752
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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