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PFL_2152 PFL_2152 pqqC pqqC pqqB_1 pqqB_1 pqqB_2 pqqB_2 pqqD pqqD PFL_2153 PFL_2153 pedA pedA cobA cobA PFL_2151 PFL_2151 pheT pheT PFL_2154 PFL_2154
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
PFL_2152Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03913. (502 aa)    
Predicted Functional Partners:
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.642
pqqB_1
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.586
pqqB_2
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.581
pqqD
Coenzyme PQQ synthesis protein D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.
 
  
 0.567
PFL_2153
Conserved hypothetical protein; Identified by match to protein family HMM PF08896; match to protein family HMM PF08898.
       0.541
pedA
2-phenylethanol ABC efflux transporter, outer membrane protein PedA; Identified by similarity to GB:ABR57217.1; match to protein family HMM TIGR02276; match to protein family HMM TIGR03866.
 
  
 0.505
cobA
Siroheme synthase/uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
 
  
 0.502
PFL_2151
Identified by match to protein family HMM PF00903; match to protein family HMM PF06983.
       0.469
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.456
PFL_2154
Conserved hypothetical protein; Identified by match to protein family HMM PF08896; match to protein family HMM PF08898.
       0.449
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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