STRINGSTRING
PFL_2266 PFL_2266 glcF glcF glcE glcE glcD glcD PFL_0816 PFL_0816 glcC glcC PFL_5308 PFL_5308 PFL_3836 PFL_3836 glcB glcB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_2266GlcG family protein; Identified by similarity to SP:P0AEQ1; match to protein family HMM PF03928. (135 aa)    
Predicted Functional Partners:
glcF
Glycolate oxidase, iron-sulfur subunit; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.
 
  
 0.949
glcE
Glycolate oxidase, subunit GlcE; Identified by similarity to SP:P52073; match to protein family HMM PF01565.
 
  
 0.938
glcD
Glycolate oxidase, subunit GlcD; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387.
 
  
 0.888
PFL_0816
Cysteine-rich domain protein; Identified by match to protein family HMM PF02754.
 
  
 0.597
glcC
Glc operon transcriptional activator; Identified by similarity to SP:P52072; match to protein family HMM PF00392; match to protein family HMM PF07729.
 
   
 0.588
PFL_5308
Conserved hypothetical protein.
 
     0.579
PFL_3836
Oxidoreductase, FAD-dependent; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
  
  
 0.444
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
  
 0.433
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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