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PFL_2273 PFL_2273 PFL_2478 PFL_2478 PFL_2476 PFL_2476 PFL_2274 PFL_2274 PFL_2272 PFL_2272 PFL_4072 PFL_4072 PFL_2931 PFL_2931 PFL_0138 PFL_0138
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2273Conserved domain protein; Identified by similarity to PIR:E83307; match to protein family HMM PF07235; match to protein family HMM TIGR03510. (57 aa)    
Predicted Functional Partners:
PFL_2478
Identified by match to protein family HMM PF07969.
 
     0.767
PFL_2476
Isochorismatase family protein; Identified by similarity to SP:P21367; match to protein family HMM PF00857.
 
    0.707
PFL_2274
Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
       0.682
PFL_2272
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
       0.493
PFL_4072
Identified by similarity to SP:P21367; match to protein family HMM PF00857.
 
    0.480
PFL_2931
Conserved hypothetical protein.
  
     0.422
PFL_0138
Putative ABC transporter, periplasmic binding protein.
  
     0.401
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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