yfcF protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yfcF

Glutathione S-transferase YfcF; Identified by similarity to SP:P77544; match to protein family HMM PF02798. (210 aa)

Predicted Functional Partners:

PFL_4586

0.965

PFL_1771

0.947

gst

0.941

PFL_6005

0.934

PFL_6206

0.924

PFL_5978

0.920

gor

0.915

PFL_4361

0.914

PFL_4990

0.912

gshB

0.906

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_1771	PFL_4361	PFL_1771	PFL_4361	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	0.921
PFL_1771	PFL_4586	PFL_1771	PFL_4586	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF02798.	0.914
PFL_1771	PFL_4990	PFL_1771	PFL_4990	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Putative glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	0.949
PFL_1771	PFL_5978	PFL_1771	PFL_5978	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	ChaC-like protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.930
PFL_1771	PFL_6005	PFL_1771	PFL_6005	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by similarity to SP:P82998; match to protein family HMM PF02798.	0.916
PFL_1771	PFL_6206	PFL_1771	PFL_6206	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.924
PFL_1771	gor	PFL_1771	PFL_3398	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione-disulfide reductase; Maintains high levels of reduced glutathione.	0.929
PFL_1771	gshB	PFL_1771	PFL_5828	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione synthase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.	0.919
PFL_1771	gst	PFL_1771	PFL_4592	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.942
PFL_1771	yfcF	PFL_1771	PFL_2402	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase YfcF; Identified by similarity to SP:P77544; match to protein family HMM PF02798.	0.947
PFL_4361	PFL_1771	PFL_4361	PFL_1771	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	0.921
PFL_4361	PFL_4586	PFL_4361	PFL_4586	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF02798.	0.918
PFL_4361	PFL_4990	PFL_4361	PFL_4990	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Putative glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	0.937
PFL_4361	PFL_5978	PFL_4361	PFL_5978	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	ChaC-like protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.	0.900
PFL_4361	PFL_6005	PFL_4361	PFL_6005	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by similarity to SP:P82998; match to protein family HMM PF02798.	0.908
PFL_4361	PFL_6206	PFL_4361	PFL_6206	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.916
PFL_4361	gor	PFL_4361	PFL_3398	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione-disulfide reductase; Maintains high levels of reduced glutathione.	0.933
PFL_4361	gshB	PFL_4361	PFL_5828	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione synthase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.	0.922
PFL_4361	gst	PFL_4361	PFL_4592	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.913
PFL_4361	yfcF	PFL_4361	PFL_2402	Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.	Glutathione S-transferase YfcF; Identified by similarity to SP:P77544; match to protein family HMM PF02798.	0.914

page 1 of 6

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About