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PFL_2508 PFL_2508 PFL_2507 PFL_2507 PFL_0710 PFL_0710 fieF fieF czcA czcA PFL_1915 PFL_1915 cadA_1 cadA_1 cadA_2 cadA_2 PFL_4718 PFL_4718 PFL_0604 PFL_0604 PFL_2558 PFL_2558
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_2508Cation efflux protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297. (332 aa)    
Predicted Functional Partners:
PFL_2507
Transcriptional repressor, FrmR family; Identified by similarity to SP:P0AAP3; match to protein family HMM PF02583.
 
  
 0.916
PFL_0710
Copper-exporting ATPase; Identified by similarity to SP:P73241; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.747
fieF
Cation diffusion facilitator family transporter FieF; Identified by similarity to SP:P69380; match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.720
czcA
Cobalt/zinc/cadmium resistance protein CzcA; Identified by similarity to SP:P13511; match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.596
PFL_1915
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.555
cadA_1
Cadmium-exporting ATPase; Identified by similarity to GB:AAK48831.1; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
  
  
 0.555
cadA_2
Cadmium-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
  
  
 0.555
PFL_4718
Metal cation transporter, zinc(II)-iron(II) permease (ZIP) family; Identified by match to protein family HMM PF02535.
   
 0.553
PFL_0604
Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
     
 0.537
PFL_2558
RND transporter, heavy metal efflux (HME) family, permease protein; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
      
 0.533
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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