STRINGSTRING
PFL_2545 PFL_2545 PFL_2546 PFL_2546 hydA hydA PFL_2547 PFL_2547 copD copD PFL_2544 PFL_2544 PFL_4370 PFL_4370 betI betI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_2545Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440; match to protein family HMM PF08362. (206 aa)    
Predicted Functional Partners:
PFL_2546
Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037.
 
   
 0.597
hydA
Dihydropyrimidinase; Identified by similarity to SP:Q59699; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
  
     0.531
PFL_2547
Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
  
     0.473
copD
Identified by match to protein family HMM PF05425.
       0.464
PFL_2544
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.440
PFL_4370
Membrane protein, DUF989 family; Identified by match to protein family HMM PF06181.
 
     0.421
betI
Transcriptional repressor BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).
  
     0.421
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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