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PFL_2547 PFL_2547 gltB gltB PFL_2546 PFL_2546 hydA hydA PFL_2550 PFL_2550 PFL_3679 PFL_3679 codA codA PFL_4137 PFL_4137 ppnP ppnP upp upp pyrR pyrR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_2547Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. (455 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
 
 0.999
PFL_2546
Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037.
 0.999
hydA
Dihydropyrimidinase; Identified by similarity to SP:Q59699; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
 
 
 0.989
PFL_2550
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879.
 
 
 0.910
PFL_3679
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
 
 0.909
codA
Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969.
  
 
  0.904
PFL_4137
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
 
 0.904
ppnP
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.900
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
  0.900
pyrR
Putative PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.
     
  0.900
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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