STRINGSTRING
PFL_2550 PFL_2550 hydA hydA PFL_2546 PFL_2546 PFL_2547 PFL_2547 PFL_4137 PFL_4137 PFL_3679 PFL_3679 pcd pcd xylC xylC PFL_3648 PFL_3648 PFL_2549 PFL_2549 uraD uraD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2550N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879. (425 aa)    
Predicted Functional Partners:
hydA
Dihydropyrimidinase; Identified by similarity to SP:Q59699; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
 
 
 0.979
PFL_2546
Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037.
 
 0.967
PFL_2547
Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
 
 
 0.910
PFL_4137
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
  
  
 
0.904
PFL_3679
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
  
  
 
0.901
pcd
Piperideine-6-carboxylate dehydrogenase; Identified by similarity to GB:BAB19801.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.801
xylC
Benzaldehyde dehydrogenase; Identified by similarity to SP:P43503; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.801
PFL_3648
Identified by similarity to GB:AAK18072.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.801
PFL_2549
Permease, cytosine/purine, uracil, thiamine, allantoin family; Identified by match to protein family HMM PF02133.
 
  
 0.735
uraD
OHCU decarboxylase; Identified by similarity to SP:Q45697; match to protein family HMM PF09349; match to protein family HMM TIGR03164.
   
 0.553
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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