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PFL_2565 PFL_2565 PFL_2564 PFL_2564 PFL_2563 PFL_2563 rzxA rzxA PFL_1328 PFL_1328 PFL_2566 PFL_2566 PFL_2287 PFL_2287 PFL_2562 PFL_2562 PFL_4990 PFL_4990
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PFL_2565Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. (294 aa)    
Predicted Functional Partners:
PFL_2564
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF07992.
 
 
 0.895
PFL_2563
Putative membrane protein, DUF81 family; Identified by match to protein family HMM PF01925.
 
     0.777
rzxA
Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.
  
 
 0.565
PFL_1328
Oxidoreductase, pyridine nucleotide-disulfide family; Identified by similarity to PIR:B83326; match to protein family HMM PF07992.
 
 
 0.523
PFL_2566
Sigma-54 dependent transcriptional regulator; Identified by similarity to GB:AAF18103.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448.
       0.479
PFL_2287
Glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
  
 
 0.434
PFL_2562
Conserved hypothetical protein; Identified by match to protein family HMM PF06803.
       0.424
PFL_4990
Putative glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
  
 
 
 0.402
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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