STRINGSTRING
PFL_2604 PFL_2604 PFL_4062 PFL_4062 PFL_2745 PFL_2745 sftP sftP PFL_0987 PFL_0987 PFL_0986 PFL_0986 pchE pchE PFL_2605 PFL_2605 PFL_1740 PFL_1740 PFL_0689 PFL_0689 tonB1 tonB1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2604TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783. (711 aa)    
Predicted Functional Partners:
PFL_4062
Conserved hypothetical protein.
 
  
 0.724
PFL_2745
Secretin and TonB N terminus short domain protein; Identified by match to protein family HMM PF07660.
 
 
 0.628
sftP
TonB-dependent outermembrane receptor SftP; Receptor Kahnert et al. 2002; identified by similarity to GB:AAF02095.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
 0.614
PFL_0987
Conserved hypothetical protein.
 
     0.548
PFL_0986
PepSY-associated TM helix domain protein; Identified by match to protein family HMM PF03929.
 
  
 0.547
pchE
Enantio-pyochelin synthetase E; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70809.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08415; match to protein family HMM TIGR01733.
   
  
 0.547
PFL_2605
Conserved hypothetical protein.
       0.545
PFL_1740
TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
 0.528
PFL_0689
Peptidase, A24 family; Identified by match to protein family HMM PF01478.
  
     0.508
tonB1
Periplasmic energy transduction protein TonB1; Identified by similarity to SP:Q05613; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.490
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (22%) [HD]