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gspH gspH PFL_2748 PFL_2748 PFL_2753 PFL_2753 gspG gspG gspI gspI gspF gspF gspE gspE gspD gspD gspL gspL pilQ-2 pilQ-2 PFL_5946 PFL_5946
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspHGeneral secretion pathway protein H; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532. (153 aa)    
Predicted Functional Partners:
PFL_2748
Putative general secretion pathway protein J; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
 
 0.990
PFL_2753
Putative general secretion pathway protein K; Identified by match to protein family HMM PF03934.
 
 
 0.945
gspG
General secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
 
  
 0.914
gspI
General secretion pathway protein I; Identified by similarity to GB:AAD05179.1; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532.
 
  
 0.889
gspF
General secretion pathway protein F; Identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
  
 0.872
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.862
gspD
General secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.
 
  
 0.804
gspL
General secretion pathway protein L; Identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709.
  
  
 0.727
pilQ-2
Pilus assembly protein PilQ; Identified by match to protein family HMM PF00437.
  
 
 0.645
PFL_5946
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.645
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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