STRINGSTRING
PFL_2772 PFL_2772 PFL_4626 PFL_4626 PFL_3155 PFL_3155 foxA foxA PFL_0989 PFL_0989 fpvR fpvR PFL_4040 PFL_4040 PFL_2747 PFL_2747 PFL_5705 PFL_5705 PFL_2745 PFL_2745 PFL_2770 PFL_2770
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2772TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (708 aa)    
Predicted Functional Partners:
PFL_4626
Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773.
 
 
 0.581
PFL_3155
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.
 
 
 0.569
foxA
TonB-dependent outermembrane ferrioxamine receptor; Transducer; identified by similarity to SP:Q01674; match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
  
   
 0.552
PFL_0989
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.
 
 
 0.527
fpvR
Sigma factor regulatory protein FpvR; Identified by similarity to GB:AAG05776.1; match to protein family HMM PF04773.
 
 
 0.516
PFL_4040
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to GB:AAX16348.1; match to protein family HMM PF04773.
 
 
 0.510
PFL_2747
Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773.
 
 
 0.488
PFL_5705
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to SP:P23485; similarity to PIR:S46356; match to protein family HMM PF04773.
 
 
 0.483
PFL_2745
Secretin and TonB N terminus short domain protein; Identified by match to protein family HMM PF07660.
 
 
 
 0.479
PFL_2770
Conserved hypothetical protein.
       0.477
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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