STRINGSTRING
PFL_2826 PFL_2826 PFL_2825 PFL_2825 PFL_2827 PFL_2827 exbB6 exbB6 PFL_2824 PFL_2824 PFL_2820 PFL_2820 exbD6 exbD6 PFL_2819 PFL_2819 PFL_2828 PFL_2828 tonB6 tonB6 rbfA rbfA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_2826Conserved hypothetical protein. (161 aa)    
Predicted Functional Partners:
PFL_2825
Conserved hypothetical protein.
  
  
 0.850
PFL_2827
PpiC-type peptidyl-prolyl cis-trans isomerase domain protein; Identified by match to protein family HMM PF00639.
  
  
 0.847
exbB6
TonB system transport protein ExbB6; Identified by match to protein family HMM PF01618.
  
 
 0.838
PFL_2824
Conserved hypothetical protein.
  
  
 0.818
PFL_2820
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF08479.
  
  
 0.804
exbD6
TonB system transport protein ExbD6; Identified by match to protein family HMM PF02472.
  
 
 0.707
PFL_2819
Identified by match to protein family HMM TIGR01552.
  
  
 0.663
PFL_2828
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126.
  
    0.631
tonB6
Periplasmic energy transduction protein TonB6; Identified by match to protein family HMM TIGR01352.
     
 0.628
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.454
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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