mtlG protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mtlG

Polyol ABC transporter, permease protein MtlG; Identified by similarity to GB:AAC04470.1; match to protein family HMM PF00528. (276 aa)

Predicted Functional Partners:

mtlF

0.998

mtlK

0.998

mtlE

0.995

PFL_4614

0.990

PFL_4616

0.958

mtlD

0.897

PFL_4617

0.887

mtlZ

0.749

mtlY

0.682

fruA

0.511

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_4614	PFL_4616	PFL_4614	PFL_4616	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.998
PFL_4614	PFL_4617	PFL_4614	PFL_4617	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	0.991
PFL_4614	fruA	PFL_4614	PFL_0861	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	PTS system, fructose-specific IIBC component; Identified by similarity to SP:P20966; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427.	0.471
PFL_4614	mtlE	PFL_4614	PFL_3070	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Polyol ABC transporter, periplasmic polyol-binding protein MtlE; Identified by similarity to GB:AAC04468.1; match to protein family HMM PF01547.	0.961
PFL_4614	mtlF	PFL_4614	PFL_3071	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Polyol ABC transporter, permease protein MtlF; Identified by similarity to GB:AAC04469.1; match to protein family HMM PF00528.	0.992
PFL_4614	mtlG	PFL_4614	PFL_3072	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Polyol ABC transporter, permease protein MtlG; Identified by similarity to GB:AAC04470.1; match to protein family HMM PF00528.	0.990
PFL_4614	mtlK	PFL_4614	PFL_3073	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Polyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.906
PFL_4616	PFL_4614	PFL_4616	PFL_4614	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.998
PFL_4616	PFL_4617	PFL_4616	PFL_4617	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	0.996
PFL_4616	fruA	PFL_4616	PFL_0861	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	PTS system, fructose-specific IIBC component; Identified by similarity to SP:P20966; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427.	0.421
PFL_4616	mtlE	PFL_4616	PFL_3070	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Polyol ABC transporter, periplasmic polyol-binding protein MtlE; Identified by similarity to GB:AAC04468.1; match to protein family HMM PF01547.	0.863
PFL_4616	mtlG	PFL_4616	PFL_3072	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Polyol ABC transporter, permease protein MtlG; Identified by similarity to GB:AAC04470.1; match to protein family HMM PF00528.	0.958
PFL_4616	mtlK	PFL_4616	PFL_3073	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Polyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.963
PFL_4617	PFL_4614	PFL_4617	PFL_4614	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.991
PFL_4617	PFL_4616	PFL_4617	PFL_4616	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.996
PFL_4617	mtlF	PFL_4617	PFL_3071	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	Polyol ABC transporter, permease protein MtlF; Identified by similarity to GB:AAC04469.1; match to protein family HMM PF00528.	0.859
PFL_4617	mtlG	PFL_4617	PFL_3072	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	Polyol ABC transporter, permease protein MtlG; Identified by similarity to GB:AAC04470.1; match to protein family HMM PF00528.	0.887
PFL_4617	mtlK	PFL_4617	PFL_3073	Putative sugar ABC transporter, periplasmic sugar-binding protein; Identified by similarity to SP:O06875; match to protein family HMM PF01547.	Polyol ABC transporter, ATP-binding protein MtlK; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.819
fruA	PFL_4614	PFL_0861	PFL_4614	PTS system, fructose-specific IIBC component; Identified by similarity to SP:P20966; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427.	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.471
fruA	PFL_4616	PFL_0861	PFL_4616	PTS system, fructose-specific IIBC component; Identified by similarity to SP:P20966; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.421

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About