STRINGSTRING
PFL_3120 PFL_3120 PFL_3119 PFL_3119 PFL_3121 PFL_3121 PFL_3123 PFL_3123 PFL_2828 PFL_2828 PFL_2345 PFL_2345 PFL_0554 PFL_0554 PFL_5874 PFL_5874 PFL_1398 PFL_1398 pueB pueB PFL_3229 PFL_3229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3120Conserved hypothetical protein. (329 aa)    
Predicted Functional Partners:
PFL_3119
Conserved hypothetical protein.
 
     0.913
PFL_3121
Peptidase, C39 family; Identified by match to protein family HMM PF03412.
 
     0.883
PFL_3123
Conserved hypothetical protein.
 
     0.866
PFL_2828
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126.
  
     0.767
PFL_2345
Conserved hypothetical protein; Identified by match to protein family HMM PF08928; match to protein family HMM PF08929.
  
     0.749
PFL_0554
HDOD domain protein; Identified by match to protein family HMM PF08668.
  
     0.747
PFL_5874
Conserved hypothetical protein.
  
     0.747
PFL_1398
Conserved hypothetical protein.
  
     0.736
pueB
Identified by similarity to GB:ABM54446.1; match to protein family HMM PF00353; match to protein family HMM PF01764.
  
     0.736
PFL_3229
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580.
  
     0.735
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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