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PFL_3212 PFL_3212 PFL_3211 PFL_3211 PFL_6168 PFL_6168 PFL_3216 PFL_3216 yveA yveA PFL_2914 PFL_2914 PFL_3221 PFL_3221 PFL_3213 PFL_3213 PFL_0763 PFL_0763 PFL_2150 PFL_2150 PFL_3813 PFL_3813
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_3212Amino acid permease, APC family; Identified by match to protein family HMM PF00324. (454 aa)    
Predicted Functional Partners:
PFL_3211
Peptidase, T4 family; Identified by match to protein family HMM PF03576.
 
     0.807
PFL_6168
Putrescine:hydrogen symporter, PuuP family; Identified by similarity to SP:P76037; match to protein family HMM PF00324.
  
     0.753
PFL_3216
Amino acid permease, APC family; Identified by match to protein family HMM PF00324.
  
     0.747
yveA
Aspartate:proton symporter YveA; Identified by similarity to SP:O07002; match to protein family HMM PF00324.
  
     0.679
PFL_2914
Amino acid permease, APC family; Identified by match to protein family HMM PF00324.
  
     0.578
PFL_3221
Conserved hypothetical protein; Identified by similarity to SP:P54796.
 
   
 0.551
PFL_3213
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
       0.500
PFL_0763
Amino acid permease, APC family; Identified by match to protein family HMM PF00324.
  
   
 0.476
PFL_2150
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
  
     0.440
PFL_3813
Amino acid transporter, AAT family; Identified by match to protein family HMM PF00324.
  
   
 0.430
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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