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PFL_3247 PFL_3247 PFL_1106 PFL_1106 PFL_4057 PFL_4057 fitF fitF PFL_3248 PFL_3248 PFL_3251 PFL_3251 PFL_3249 PFL_3249 PFL_2454 PFL_2454 PFL_3328 PFL_3328 PFL_3250 PFL_3250 PFL_4203 PFL_4203
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3247Response regulator; Identified by match to protein family HMM PF00072. (125 aa)    
Predicted Functional Partners:
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.861
PFL_4057
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.839
fitF
Sensory box sensor histidine kinase/response regulator FitF; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91232.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
 
 0.826
PFL_3248
Response regulator/sensor histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.765
PFL_3251
CHASE3/GAF sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF05227.
 
 
 0.752
PFL_3249
Protein-glutamate methylesterase, CheB family; Identified by match to protein family HMM PF01339.
  
 
 0.735
PFL_2454
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.706
PFL_3328
Response regulator/sensor histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.666
PFL_3250
Chemotaxis protein methyltransferase, CheR family; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705.
  
  
 0.648
PFL_4203
Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
 
 
 0.637
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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