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hpaB hpaB hpaC hpaC hpaD hpaD pheA pheA hpaE hpaE hpaH hpaH hpcD_2 hpcD_2 PFL_3609 PFL_3609 PFL_3512 PFL_3512
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpaB4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; Identified by similarity to SP:Q57160; match to protein family HMM PF03241; match to protein family HMM TIGR02310. (520 aa)    
Predicted Functional Partners:
hpaC
4-hydroxyphenylacetate 3-monooxygenase, reductase component; Identified by similarity to SP:Q57501; match to protein family HMM PF01613; match to protein family HMM TIGR02296.
 
 
 0.985
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase; Identified by similarity to SP:Q05353; match to protein family HMM PF02900; match to protein family HMM TIGR02298.
 
 
 0.933
pheA
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.
      
 0.737
hpaE
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Identified by similarity to SP:P42269; match to protein family HMM PF00171; match to protein family HMM TIGR02299; Belongs to the aldehyde dehydrogenase family.
 
   
 0.641
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; Identified by similarity to SP:P42270; match to protein family HMM PF01689; match to protein family HMM TIGR02312.
 
   
 0.628
hpcD_2
5-carboxymethyl-2-hydroxymuconate delta isomerase; Identified by similarity to SP:Q05354; match to protein family HMM PF02962.
 
  
 0.574
PFL_3609
Flavin reductase-like protein; Identified by similarity to SP:P54990; match to protein family HMM PF01613.
 
  
 0.496
PFL_3512
Flavin reductase domain protein; Identified by match to protein family HMM PF01613.
 
  
 0.453
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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