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PFL_3429 PFL_3429 PFL_0765 PFL_0765 PFL_2716 PFL_2716 wrbA wrbA ubiE ubiE PFL_2495 PFL_2495 PFL_4229 PFL_4229 PFL_3430 PFL_3430 PFL_3431 PFL_3431
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3429NAD(P)H quinone oxidoreductase, quinone family; Identified by similarity to SP:P45245; match to protein family HMM PF02525; match to protein family HMM PF03358. (202 aa)    
Predicted Functional Partners:
PFL_0765
NAD(P)H dehydrogenase, quinone family; Identified by similarity to SP:P45245; match to protein family HMM PF02525; match to protein family HMM PF03358.
  
  
  0.976
PFL_2716
NAD(P)H dehydrogenase, quinone family; Identified by match to protein family HMM PF02525.
  
  
 
0.926
wrbA
NAD(P)H:quinone oxidoreductase, type IV; Identified by match to protein family HMM PF00258; match to protein family HMM TIGR01755; Belongs to the WrbA family.
    
 0.920
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
PFL_2495
Glutathione-regulated potassium-efflux system protein; Identified by similarity to SP:P03819; similarity to SP:P45522; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.737
PFL_4229
Transporter, CPA2 family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.737
PFL_3430
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.711
PFL_3431
Conserved hypothetical protein.
       0.437
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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