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PFL_3523 PFL_3523 PFL_2950 PFL_2950 PFL_2472 PFL_2472 PFL_2083 PFL_2083 puuB puuB fmt fmt PFL_3521 PFL_3521 PFL_3522 PFL_3522 PFL_4413 PFL_4413 argE_1 argE_1 PFL_3525 PFL_3525
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PFL_3523Aldehyde dehydrogenase (NAD) family protein; Identified by similarity to SP:P23883; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (496 aa)    
Predicted Functional Partners:
PFL_2950
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
  
 
  0.919
PFL_2472
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
  
 
  0.918
PFL_2083
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
  
 
  0.917
puuB
Putative gamma-glutamylputrescine oxidoreductase PuuB; Identified by similarity to SP:P37906; match to protein family HMM PF01266.
  
 
  0.917
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.866
PFL_3521
Aminotransferase, class III family; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.551
PFL_3522
Amino acid transporter, AAT/LAT family; Identified by match to protein family HMM PF00324.
  
  
 0.549
PFL_4413
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00474; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.438
argE_1
Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01892.
     
 0.436
PFL_3525
Conserved hypothetical protein; Identified by match to protein family HMM PF06267.
       0.430
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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