STRINGSTRING
PFL_3526 PFL_3526 PFL_3527 PFL_3527 PFL_3525 PFL_3525 argE_1 argE_1 PFL_5113 PFL_5113 PFL_3225 PFL_3225 PFL_3528 PFL_3528 PFL_0796 PFL_0796
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3526Identified by match to protein family HMM PF01042. (136 aa)    
Predicted Functional Partners:
PFL_3527
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
    0.984
PFL_3525
Conserved hypothetical protein; Identified by match to protein family HMM PF06267.
 
     0.911
argE_1
Acetylornithine deacetylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01892.
 
     0.761
PFL_5113
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.742
PFL_3225
Conserved hypothetical protein; Identified by match to protein family HMM PF05899.
  
     0.459
PFL_3528
AMP-binding domain protein; Identified by match to protein family HMM PF00501.
       0.427
PFL_0796
Identified by match to protein family HMM PF01042.
 
   
 0.421
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.