STRINGSTRING
PFL_3682 PFL_3682 PFL_3681 PFL_3681 PFL_3683 PFL_3683
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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[Homology]
Score
PFL_3682Putative citrate:proton symporter; Identified by similarity to SP:P07661; match to protein family HMM PF00083; match to protein family HMM PF07690. (449 aa)    
Predicted Functional Partners:
PFL_3681
Identified by match to protein family HMM PF01425.
       0.552
PFL_3683
Outer membrane porin, OprD family; Identified by similarity to SP:P32722; match to protein family HMM PF03573.
       0.506
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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