STRINGSTRING
cybB cybB rimO rimO osmC osmC katG katG phnX phnX PFL_5032 PFL_5032 azoR azoR katE katE motB motB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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cybBCytochrome b561; Identified by similarity to SP:P08732; match to protein family HMM PF01292. (184 aa)    
Predicted Functional Partners:
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
      0.678
osmC
Peroxiredoxin OsmC; Identified by similarity to SP:P0C0L2; match to protein family HMM PF02566; match to protein family HMM TIGR03562.
      
 0.541
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
   
  
 0.488
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
       0.466
PFL_5032
Identified by match to protein family HMM PF01292.
  
     0.431
azoR
FMN-dependent NADH-azoreductase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
  
   
 0.426
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
     
 0.418
motB
Chemotaxis protein MotB; Identified by similarity to SP:P0AF06; match to protein family HMM PF00691.
  
   
 0.413
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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