STRINGSTRING
PFL_4021 PFL_4021 PFL_4020 PFL_4020 queD queD PFL_4022 PFL_4022 ddpX ddpX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4021Identified by match to protein family HMM PF05014. (168 aa)    
Predicted Functional Partners:
PFL_4020
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.723
queD
Queuosine biosynthesis protein QueD; Identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367.
       0.616
PFL_4022
Conserved hypothetical protein; Identified by similarity to PIR:F82957.
       0.478
ddpX
D-Ala-D-Ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
  
    0.436
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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