Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PFL_1810 | codA | PFL_1810 | PFL_4033 | Permease, cytosine/purine, uracil, thiamine, allantoin family; Identified by match to protein family HMM PF02133; Belongs to the purine-cytosine permease (2.A.39) family. | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.468 |
| PFL_2451 | codA | PFL_2451 | PFL_4033 | Conserved hypothetical protein; Identified by similarity to SP:P0ADR8; match to protein family HMM PF03641. | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.902 |
| PFL_2451 | ppnP | PFL_2451 | PFL_4201 | Conserved hypothetical protein; Identified by similarity to SP:P0ADR8; match to protein family HMM PF03641. | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.900 |
| PFL_2546 | PFL_2547 | PFL_2546 | PFL_2547 | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | 0.999 |
| PFL_2546 | PFL_2733 | PFL_2546 | PFL_2733 | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | Identified by similarity to SP:Q01263; match to protein family HMM PF02538. | 0.503 |
| PFL_2546 | codA | PFL_2546 | PFL_4033 | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.927 |
| PFL_2546 | ppnP | PFL_2546 | PFL_4201 | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.900 |
| PFL_2546 | pyrR | PFL_2546 | PFL_5832 | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | Putative PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.961 |
| PFL_2546 | upp | PFL_2546 | PFL_5139 | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.931 |
| PFL_2547 | PFL_2546 | PFL_2547 | PFL_2546 | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | 0.999 |
| PFL_2547 | codA | PFL_2547 | PFL_4033 | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.904 |
| PFL_2547 | ppnP | PFL_2547 | PFL_4201 | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.900 |
| PFL_2547 | pyrR | PFL_2547 | PFL_5832 | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Putative PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.900 |
| PFL_2547 | upp | PFL_2547 | PFL_5139 | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.900 |
| PFL_2732 | PFL_2733 | PFL_2732 | PFL_2733 | Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378. | Identified by similarity to SP:Q01263; match to protein family HMM PF02538. | 0.999 |
| PFL_2732 | codA | PFL_2732 | PFL_4033 | Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378. | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.900 |
| PFL_2733 | PFL_2546 | PFL_2733 | PFL_2546 | Identified by similarity to SP:Q01263; match to protein family HMM PF02538. | Dihydroorotate dehydrogenase family/4Fe-4S binding domain protein; Identified by match to protein family HMM PF01180; match to protein family HMM TIGR01037. | 0.503 |
| PFL_2733 | PFL_2732 | PFL_2733 | PFL_2732 | Identified by similarity to SP:Q01263; match to protein family HMM PF02538. | Identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378. | 0.999 |
| PFL_2733 | codA | PFL_2733 | PFL_4033 | Identified by similarity to SP:Q01263; match to protein family HMM PF02538. | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.900 |
| codA | PFL_1810 | PFL_4033 | PFL_1810 | Cytosine deaminase; Identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969. | Permease, cytosine/purine, uracil, thiamine, allantoin family; Identified by match to protein family HMM PF02133; Belongs to the purine-cytosine permease (2.A.39) family. | 0.468 |
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