STRINGSTRING
PFL_4104 PFL_4104 PFL_4106 PFL_4106 PFL_4105 PFL_4105 PFL_4107 PFL_4107 PFL_2875 PFL_2875 PFL_5921 PFL_5921 PFL_2688 PFL_2688 PFL_4103 PFL_4103 PFL_2038 PFL_2038 PFL_3506 PFL_3506 PFL_4903 PFL_4903
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4104Identified by match to protein family HMM PF00561. (301 aa)    
Predicted Functional Partners:
PFL_4106
NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF08338; match to protein family HMM TIGR01777.
 
     0.776
PFL_4105
Conserved hypothetical protein.
       0.773
PFL_4107
Conserved hypothetical protein; Identified by match to protein family HMM PF01326.
       0.703
PFL_2875
Conserved hypothetical protein.
  
     0.610
PFL_5921
Metal-dependent phosphohydrolase; Identified by match to protein family HMM PF01966.
  
     0.528
PFL_2688
Conserved hypothetical protein.
  
     0.475
PFL_4103
Conserved hypothetical protein.
  
   0.442
PFL_2038
Putative N-hydroxyarylamine O-acetyltransferase; Identified by similarity to SP:Q00267; match to protein family HMM PF00797; Belongs to the arylamine N-acetyltransferase family.
  
     0.430
PFL_3506
Identified by match to protein family HMM PF00561.
  
   
 0.410
PFL_4903
Putative hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
  
     0.404
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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