Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PFL_1751 | PFL_4200 | PFL_1751 | PFL_4200 | Identified by match to protein family HMM PF00036. | Identified by match to protein family HMM PF00929. | 0.463 |
| PFL_4200 | PFL_1751 | PFL_4200 | PFL_1751 | Identified by match to protein family HMM PF00929. | Identified by match to protein family HMM PF00036. | 0.463 |
| PFL_4200 | atuF | PFL_4200 | PFL_4199 | Identified by match to protein family HMM PF00929. | geranyl-CoA carboxylase, alpha subunit AtuF; Identified by similarity to GB:AAG06279.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786. | 0.511 |
| PFL_4200 | ppnP | PFL_4200 | PFL_4201 | Identified by match to protein family HMM PF00929. | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.618 |
| PFL_4200 | rnc | PFL_4200 | PFL_1071 | Identified by match to protein family HMM PF00929. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.430 |
| PFL_4200 | rplB | PFL_4200 | PFL_5579 | Identified by match to protein family HMM PF00929. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.467 |
| PFL_4200 | rplC | PFL_4200 | PFL_5582 | Identified by match to protein family HMM PF00929. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.461 |
| atuF | PFL_4200 | PFL_4199 | PFL_4200 | geranyl-CoA carboxylase, alpha subunit AtuF; Identified by similarity to GB:AAG06279.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786. | Identified by match to protein family HMM PF00929. | 0.511 |
| atuF | ppnP | PFL_4199 | PFL_4201 | geranyl-CoA carboxylase, alpha subunit AtuF; Identified by similarity to GB:AAG06279.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786. | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | 0.404 |
| ppnP | PFL_4200 | PFL_4201 | PFL_4200 | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | Identified by match to protein family HMM PF00929. | 0.618 |
| ppnP | atuF | PFL_4201 | PFL_4199 | Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. | geranyl-CoA carboxylase, alpha subunit AtuF; Identified by similarity to GB:AAG06279.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02785; match to protein family HMM PF02786. | 0.404 |
| rnc | PFL_4200 | PFL_1071 | PFL_4200 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Identified by match to protein family HMM PF00929. | 0.430 |
| rnc | rplB | PFL_1071 | PFL_5579 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.826 |
| rnc | rplC | PFL_1071 | PFL_5582 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.878 |
| rplB | PFL_4200 | PFL_5579 | PFL_4200 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Identified by match to protein family HMM PF00929. | 0.467 |
| rplB | rnc | PFL_5579 | PFL_1071 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.826 |
| rplB | rplC | PFL_5579 | PFL_5582 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| rplC | PFL_4200 | PFL_5582 | PFL_4200 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Identified by match to protein family HMM PF00929. | 0.461 |
| rplC | rnc | PFL_5582 | PFL_1071 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.878 |
| rplC | rplB | PFL_5582 | PFL_5579 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |