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PFL_4238 PFL_4238 PFL_4239 PFL_4239 PFL_2954 PFL_2954 PFL_2516 PFL_2516 PFL_1105 PFL_1105 PFL_5641 PFL_5641 PFL_4205 PFL_4205 PFL_3822 PFL_3822 pedS2 pedS2 gacS gacS PFL_2709 PFL_2709
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4238DNA-binding response regulator, LuxR family; Identified by similarity to SP:P16574; match to protein family HMM PF00072; match to protein family HMM PF00196. (208 aa)    
Predicted Functional Partners:
PFL_4239
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.986
PFL_2954
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.980
PFL_2516
Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.959
PFL_1105
Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.958
PFL_5641
Sensory box histidine kinase; Identified by similarity to GB:AAG01454.2; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
 0.858
PFL_4205
Putative sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 
 0.850
PFL_3822
Sensor histidine kinase; Identified by similarity to SP:P09835; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 
 0.848
pedS2
Two-component sensor histidine kinase PedS2; Identified by similarity to GB:ABR57219.1; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 
 0.842
gacS
Sensor protein GacS; See Corbell and Loper 1995 (PMID:7592389) for more information; identified by similarity to SP:P48027; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 
 0.700
PFL_2709
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 
 0.693
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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