STRINGSTRING
PFL_4254 PFL_4254 aroB aroB PFL_5540 PFL_5540 aroF_1 aroF_1 aroF_2 aroF_2 pheA pheA PFL_0353 PFL_0353 PFL_0385 PFL_0385 pchB pchB PFL_4253 PFL_4253 aroA aroA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_42543-deoxy-7-phosphoheptulonate synthase; Identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358. (448 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
 
  
 0.931
PFL_5540
3-dehydroquinate synthase domain protein; Identified by match to protein family HMM PF01761; match to protein family HMM PF09335.
    
 0.921
aroF_1
3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
     
 0.910
aroF_2
3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
     
 0.910
pheA
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.
   
 
 0.806
PFL_0353
Chorismate mutase; Identified by match to protein family HMM PF01817.
   
 
 0.655
PFL_0385
Putative chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
   
 
 0.655
pchB
Isochorismate pyruvate-lyase PchB; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70805.1; match to protein family HMM PF01817; match to protein family HMM TIGR01803.
   
 
 0.655
PFL_4253
Conserved hypothetical protein; Identified by similarity to GB:AAN67486.1.
     
 0.585
aroA
Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
     
 0.537
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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