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wbpM wbpM wbjD wbjD wecB wecB wbjB wbjB glmU glmU pslB pslB wbpL wbpL PFL_5104 PFL_5104 PFL_5960 PFL_5960 arnB arnB pseC pseC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
wbpMNucleotide sugar epimerase/dehydratase WbpM; Identified by similarity to GB:AAF72960.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993. (664 aa)    
Predicted Functional Partners:
wbjD
UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase WbjD; See Kneidinger et. al. 2003 (PMID: 12464616) for more information; identified by similarity to GB:AAD45267.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.991
wecB
UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to SP:P27828; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.951
wbjB
Trifunctional UDP-D-GlcNAc 4,6-dehydratase/5-epimerase/3-epimerase WbjB; See Kneidinger et. al. 2003 (PMID: 12464616) for more information; identified by similarity to GB:AAD45265.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08485.
  
  
0.934
glmU
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the trans [...]
    
 0.921
pslB
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase PslB; See Byrd et. al. (PMID: 19659934) for more information; identified by similarity to GB:AAC61851.1; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.872
wbpL
Glycosyltransferase WbpL; Identified by similarity to GB:AAG06533.1; match to protein family HMM PF00953.
 
   
 0.854
PFL_5104
Putative glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.
 
  
 0.799
PFL_5960
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.785
arnB
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.
 
  
 0.769
pseC
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR03588; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.750
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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