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wbpV wbpV wbpL wbpL PFL_5104 PFL_5104 wbpM wbpM wbjD wbjD rpsN rpsN rpsS rpsS wecB wecB rpsL rpsL PFL_5105 PFL_5105 rpsC rpsC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
wbpVPutative UDP-glucose 4-epimerase WbpV; Identified by similarity to GB:AAF23991.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993. (320 aa)    
Predicted Functional Partners:
wbpL
Glycosyltransferase WbpL; Identified by similarity to GB:AAG06533.1; match to protein family HMM PF00953.
 
  
 0.910
PFL_5104
Putative glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.
 
  
 0.778
wbpM
Nucleotide sugar epimerase/dehydratase WbpM; Identified by similarity to GB:AAF72960.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.733
wbjD
UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase WbjD; See Kneidinger et. al. 2003 (PMID: 12464616) for more information; identified by similarity to GB:AAD45267.1; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.691
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.604
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.604
wecB
UDP-N-acetylglucosamine 2-epimerase; Identified by similarity to SP:P27828; match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.593
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.585
PFL_5105
Conserved hypothetical protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
 
 0.571
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.564
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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