STRINGSTRING
bolA bolA grxD grxD PFL_4327 PFL_4327 PFL_4323 PFL_4323 PFL_4325 PFL_4325 PFL_4324 PFL_4324 fumC_3 fumC_3 yhgI yhgI PFL_4769 PFL_4769 grxC grxC PFL_0972 PFL_0972
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bolABolA-like protein; Identified by similarity to SP:P0ABE4; match to protein family HMM PF01722; Belongs to the BolA/IbaG family. (99 aa)    
Predicted Functional Partners:
grxD
Monothiol glutaredoxin, Grx4 family; Identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 0.948
PFL_4327
Conserved hypothetical protein.
  
    0.882
PFL_4323
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.584
PFL_4325
Identified by match to protein family HMM PF00581; Belongs to the UPF0176 family.
       0.584
PFL_4324
Conserved hypothetical protein.
       0.561
fumC_3
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.553
yhgI
IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.550
PFL_4769
DNA-binding stress protein, Dps family; Identified by match to protein family HMM PF00210; Belongs to the Dps family.
   
    0.479
grxC
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
 
 
 0.447
PFL_0972
Conserved hypothetical protein.
  
   
 0.426
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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