STRINGSTRING
PFL_4327 PFL_4327 bolA bolA PFL_0550 PFL_0550 PFL_5515 PFL_5515 algZ algZ PFL_4290 PFL_4290 PFL_1274 PFL_1274 PFL_5238 PFL_5238 PFL_4323 PFL_4323 algX algX PFL_0107 PFL_0107
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4327Conserved hypothetical protein. (187 aa)    
Predicted Functional Partners:
bolA
BolA-like protein; Identified by similarity to SP:P0ABE4; match to protein family HMM PF01722; Belongs to the BolA/IbaG family.
  
    0.882
PFL_0550
HAMP domain protein; Identified by match to protein family HMM PF00672.
  
     0.759
PFL_5515
Conserved hypothetical protein.
  
     0.685
algZ
Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.
  
   
 0.669
PFL_4290
CHAD domain protein; Identified by match to protein family HMM PF05235.
  
     0.665
PFL_1274
Conserved hypothetical protein.
  
     0.662
PFL_5238
Conserved hypothetical protein.
  
     0.657
PFL_4323
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.655
algX
Alginate biosynthesis protein AlgX; Identified by similarity to GB:AAA91126.1.
  
     0.648
PFL_0107
Conserved hypothetical protein.
  
     0.633
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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