STRINGSTRING
uraD uraD uraH_1 uraH_1 PFL_4366 PFL_4366 PFL_5744 PFL_5744 uraH_2 uraH_2 PFL_1852 PFL_1852 PFL_4370 PFL_4370 allA allA PFL_3679 PFL_3679 PFL_4137 PFL_4137 xdhB xdhB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uraDOHCU decarboxylase; Identified by similarity to SP:Q45697; match to protein family HMM PF09349; match to protein family HMM TIGR03164. (171 aa)    
Predicted Functional Partners:
uraH_1
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.997
PFL_4366
Putative urate catabolism protein; Identified by match to protein family HMM PF01522; match to protein family HMM TIGR03212.
    0.995
PFL_5744
Identified by match to protein family HMM PF00576.
 
 
 0.983
uraH_2
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
 0.980
PFL_1852
Asp/Glu/hydantoin racemase; Identified by match to protein family HMM PF01177.
 
  
  0.919
PFL_4370
Membrane protein, DUF989 family; Identified by match to protein family HMM PF06181.
 
    0.887
allA
Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
    0.846
PFL_3679
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
   
 0.813
PFL_4137
N-carbamyl-L-amino acid amidohydrolase; Identified by similarity to GB:BAB78482.1; match to protein family HMM PF01546; match to protein family HMM TIGR01879.
   
 0.771
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; Identified by similarity to GB:CAA04470.2; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965.
 
     0.760
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.