STRINGSTRING
PFL_4372 PFL_4372 PFL_4192 PFL_4192 PFL_5415 PFL_5415 PFL_5239 PFL_5239 phaG phaG PFL_5241 PFL_5241 PFL_5240 PFL_5240 PFL_1109 PFL_1109 PFL_3229 PFL_3229 PFL_1562 PFL_1562
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4372Conserved hypothetical protein. (261 aa)    
Predicted Functional Partners:
PFL_4192
Conserved hypothetical protein.
  
     0.599
PFL_5415
Putative membrane protein; Identified by match to protein family HMM PF06790.
  
     0.554
PFL_5239
Conserved hypothetical protein.
  
     0.484
phaG
(R)-3-hydroxydecanoyl-ACP:CoA transacylase; Identified by similarity to SP:O85207; match to protein family HMM PF00561.
  
     0.478
PFL_5241
Conserved hypothetical protein.
  
     0.475
PFL_5240
Conserved hypothetical protein.
  
     0.464
PFL_1109
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02285.
  
     0.452
PFL_3229
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580.
  
    0.416
PFL_1562
Putative lipoprotein; Identified by match to protein family HMM TIGR02001.
  
     0.411
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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