STRINGSTRING
PFL_4417 PFL_4417 PFL_6017 PFL_6017 PFL_1947 PFL_1947 PFL_0550 PFL_0550 PFL_4777 PFL_4777 PFL_1645 PFL_1645 PFL_4290 PFL_4290 PFL_5260 PFL_5260 PFL_1139 PFL_1139 PFL_1870 PFL_1870 PFL_6072 PFL_6072
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4417Conserved hypothetical protein. (178 aa)    
Predicted Functional Partners:
PFL_6017
Conserved hypothetical protein.
  
     0.745
PFL_1947
Conserved hypothetical protein.
  
     0.741
PFL_0550
HAMP domain protein; Identified by match to protein family HMM PF00672.
  
     0.737
PFL_4777
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
  
     0.728
PFL_1645
HPt domain protein; Identified by match to protein family HMM PF01627.
  
    0.715
PFL_4290
CHAD domain protein; Identified by match to protein family HMM PF05235.
  
     0.662
PFL_5260
Pentapeptide repeat domain protein; Identified by match to protein family HMM PF00805.
  
     0.652
PFL_1139
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.638
PFL_1870
Conserved hypothetical protein.
  
    0.631
PFL_6072
HDOD domain protein; Identified by match to protein family HMM PF08668.
  
     0.627
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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