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PFL_4449 PFL_4449 PFL_4450 PFL_4450 pfeR pfeR pfeS pfeS PFL_1593 PFL_1593 PFL_3269 PFL_3269 PFL_0187 PFL_0187 PFL_2707 PFL_2707 gltR gltR PFL_2637 PFL_2637 PFL_4997 PFL_4997
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_4449Sensor histidine kinase; Identified by similarity to SP:Q04804; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (451 aa)    
Predicted Functional Partners:
PFL_4450
DNA-binding response regulator; Identified by similarity to SP:Q04803; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.996
pfeR
Transcriptional activator PfeR; Identified by similarity to SP:Q04803; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.983
pfeS
Sensor protein PfeS; Identified by similarity to SP:Q04804; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
 
 
0.909
PFL_1593
DNA-binding response regulator; Identified by similarity to SP:P0AE88; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.827
PFL_3269
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.827
PFL_0187
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF08668.
 
 
 0.822
PFL_2707
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.816
gltR
DNA-binding response regulator GltR; Identified by similarity to GB:AAC44475.1; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.805
PFL_2637
Putative transcriptional regulatory protein RstA; Identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.801
PFL_4997
DNA-binding response regulator, OmpR family; Identified by similarity to SP:P0AA16; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.792
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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