STRINGSTRING
sprT sprT PFL_5719 PFL_5719 mvaT mvaT PFL_5774 PFL_5774 ndpA_1 ndpA_1 PFL_4782 PFL_4782 ndpA_2 ndpA_2 PFL_0521 PFL_0521 PFL_4464 PFL_4464 mvaV mvaV PFL_4981 PFL_4981
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sprTMetallopeptidase, SprT family; Identified by match to protein family HMM PF03926; Belongs to the SprT family. (164 aa)    
Predicted Functional Partners:
PFL_5719
Conserved hypothetical protein.
  
     0.638
mvaT
Transcriptional regulator MvaT; Identified by similarity to GB:AAX18928.1.
  
     0.561
PFL_5774
Integral membrane protein, YccS/YhfK family; Identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667.
  
     0.554
ndpA_1
Nucleoid-associated protein NdpA; Identified by match to protein family HMM PF04245.
  
     0.552
PFL_4782
Conserved hypothetical protein.
  
     0.538
ndpA_2
Nucleoid-associated protein NdpA; Identified by match to protein family HMM PF04245.
  
     0.524
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.516
PFL_4464
Conserved hypothetical protein; Identified by similarity to SP:P0AD17; match to protein family HMM PF06930.
       0.515
mvaV
Transcriptional regulator MvaV; Identified by similarity to GB:AAX18931.1.
  
     0.481
PFL_4981
Putative transcriptional regulator; Identified by similarity to GB:AAC46083.1.
  
     0.477
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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