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PFL_4528 PFL_4528 PFL_4529 PFL_4529 PFL_4527 PFL_4527 flgG flgG rzxA rzxA PFL_4046 PFL_4046 PFL_4656 PFL_4656 PFL_1360 PFL_1360 cobB-2 cobB-2 cobB-3 cobB-3 PFL_2272 PFL_2272
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Coexpression
Experiments
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[Homology]
Score
PFL_4528Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311. (263 aa)    
Predicted Functional Partners:
PFL_4529
Conserved hypothetical protein.
  
  
 0.714
PFL_4527
Putative membrane protein; Identified by match to protein family HMM PF01925.
 
 
   0.678
flgG
Flagellar basal-body rod protein FlgG; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; match to protein family HMM TIGR03506; Belongs to the flagella basal body rod proteins family.
    
   0.539
rzxA
Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.
  
  
 0.508
PFL_4046
Transcriptional regulator, AraC family; Identified by similarity to SP:P76241; match to protein family HMM PF00165.
 
 
0.484
PFL_4656
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.
     
 0.484
PFL_1360
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.478
cobB-2
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
  
 0.422
cobB-3
NAD-dependent deacetylase; Identified by similarity to SP:Q9I4L0; match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.422
PFL_2272
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
 
0.415
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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