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bdlA bdlA PFL_5042 PFL_5042 cheA cheA PFL_4482 PFL_4482 PFL_4203 PFL_4203 PFL_1133 PFL_1133 PFL_1676 PFL_1676 PFL_4481 PFL_4481 PFL_1106 PFL_1106 cheB cheB chpA chpA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdlABiofilm dispersion protein BdlA; Identified by similarity to SP:Q9I3S1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229. (439 aa)    
Predicted Functional Partners:
PFL_5042
Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
 
 0.980
cheA
Chemotaxis sensor histidine kinase CheA; Identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 0.974
PFL_4482
Response regulator receiver domain/CheW-like domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
 
 0.971
PFL_4203
Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
 
 0.963
PFL_1133
Sensor histidine kinase/response regulator; Identified by similarity to GB:AAL46994.1; similarity to GB:AAO92337.1; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.953
PFL_1676
Identified by match to protein family HMM PF01584.
 
 0.949
PFL_4481
Chemotaxis protein methyltransferase, CheR family; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
 0.940
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
 
 
 0.938
cheB
Chemotaxis response regulator/protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.935
chpA
Putative sensor histidine kinase/response regulator ChpA; Identified by similarity to GB:AAC23931.2; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 0.920
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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