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PFL_4541 PFL_4541 PFL_3981 PFL_3981 phlA phlA pltB pltB alkB alkB PFL_4542 PFL_4542 PFL_1106 PFL_1106 PFL_0677 PFL_0677 rzxH rzxH PFL_5915 PFL_5915 PFL_2296 PFL_2296
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_4541Fatty acid hydroxylase family protein; Identified by match to protein family HMM PF04116. (303 aa)    
Predicted Functional Partners:
PFL_3981
Fatty acid hydroxylase family protein; Identified by match to protein family HMM PF04116.
  
     0.680
phlA
2,4-diacetylphloroglucinol biosynthesis protein PhlA; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20927.1; match to protein family HMM PF08541.
   
 
 0.588
pltB
Polyketide synthase PltB; Previously identified and sequenced (PMID: 9434161 Nowak-Thompson et al. 1997); identified by similarity to GB:AAQ90173.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.
  
  
 0.540
alkB
Alkane 1-monooxygenase; Identified by similarity to SP:P12691; match to protein family HMM PF00487.
 
  
 0.521
PFL_4542
Peptidase propeptide and YpeB domain protein; Identified by match to protein family HMM PF03413.
       0.521
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.506
PFL_0677
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
  
 0.495
rzxH
Cytochrome P450 monooxygenase; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
 
 0.491
PFL_5915
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
  
  
 0.476
PFL_2296
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
   
 
 0.464
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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