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PFL_4548 PFL_4548 PFL_4547 PFL_4547 PFL_1515 PFL_1515 PFL_4551 PFL_4551 PFL_4549 PFL_4549 ureC ureC ureB ureB pxpA pxpA ureA ureA PFL_4550 PFL_4550 PFL_4552 PFL_4552
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_4548Allophanate hydrolase subunit 1 family protein; Identified by match to protein family HMM PF02682. (290 aa)    
Predicted Functional Partners:
PFL_4547
Biotin-dependent carboxylase-like domain protein; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.
 
 0.995
PFL_1515
Allophanate hydrolase subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.
 
 
 0.970
PFL_4551
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.959
PFL_4549
Putative acetyl-CoA carboxylase, biotin carboxylase subunit; Identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786.
 
    0.931
ureC
Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.910
ureB
Urease, beta subunit; Identified by similarity to SP:P18315; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family.
     
 0.907
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.903
ureA
Urease, gamma subunit; Identified by similarity to SP:P73796; match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.
     
 0.902
PFL_4550
Putative biotin-requiring enzyme; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
    0.881
PFL_4552
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.746
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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