STRINGSTRING
gntK gntK gnd gnd pgl pgl edd edd PFL_0054 PFL_0054 PFL_0053 PFL_0053 ghrB2 ghrB2 ghrB1 ghrB1 PFL_3276 PFL_3276 gntT gntT gntR gntR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
gntKGluconokinase GntK; Identified by similarity to SP:P46859; match to protein family HMM TIGR01313. (177 aa)    
Predicted Functional Partners:
gnd
Phosphogluconate dehydrogenase (decarboxylating); Identified by similarity to SP:P12013; match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00872.
  
 0.993
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
 
 
 0.953
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
  
 
 0.942
PFL_0054
Gluconate 2-dehydrogenase flavoprotein; Identified by similarity to GB:AAC45885.1; match to protein family HMM PF00732.
     
 0.905
PFL_0053
Gluconate 2-dehydrogenase subunit 3; Identified by similarity to SP:O34213.
     
 0.904
ghrB2
Glyoxylate/hydroxypyruvate reductase B; Identified by similarity to SP:P37666; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.904
ghrB1
Glyoxylate/hydroxypyruvate reductase B; Identified by similarity to SP:P37666; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.904
PFL_3276
Conserved hypothetical protein.
    
 0.904
gntT
High-affinity gluconate transporter GntT; Identified by similarity to SP:P39835; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791.
 
  
 0.833
gntR
Transcriptional regulator GntR; Identified by similarity to SP:P46860; match to protein family HMM PF00356; match to protein family HMM PF00532.
 
 
 0.790
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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