oprB protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oprB

Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966. (449 aa)

Predicted Functional Partners:

PFL_4616

0.688

PFL_5414

0.675

oprF

0.674

PFL_3366

0.667

scrY

0.645

PFL_4614

0.635

PFL_4615

0.621

PFL_4612

0.595

oprC

0.562

oprB2

0.549

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_3366	oprB	PFL_3366	PFL_4613	Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.667
PFL_3366	oprB2	PFL_3366	PFL_4915	Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.667
PFL_3366	oprF	PFL_3366	PFL_1876	Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.	Outer membrane porin OprF; Identified by similarity to SP:P13794; match to protein family HMM PF00691; match to protein family HMM PF02462; match to protein family HMM PF05736.	0.633
PFL_3366	scrY	PFL_3366	PFL_3239	Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.	Sucrose porin ScrY; Identified by similarity to SP:P22340; match to protein family HMM PF02264.	0.596
PFL_4612	PFL_4614	PFL_4612	PFL_4614	Identified by match to protein family HMM PF01263; Belongs to the glucose-6-phosphate 1-epimerase family.	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.409
PFL_4612	oprB	PFL_4612	PFL_4613	Identified by match to protein family HMM PF01263; Belongs to the glucose-6-phosphate 1-epimerase family.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.595
PFL_4614	PFL_4612	PFL_4614	PFL_4612	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Identified by match to protein family HMM PF01263; Belongs to the glucose-6-phosphate 1-epimerase family.	0.409
PFL_4614	PFL_4615	PFL_4614	PFL_4615	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.998
PFL_4614	PFL_4616	PFL_4614	PFL_4616	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.998
PFL_4614	oprB	PFL_4614	PFL_4613	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.635
PFL_4614	scrY	PFL_4614	PFL_3239	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Sucrose porin ScrY; Identified by similarity to SP:P22340; match to protein family HMM PF02264.	0.480
PFL_4615	PFL_4614	PFL_4615	PFL_4614	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.998
PFL_4615	PFL_4616	PFL_4615	PFL_4616	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.998
PFL_4615	oprB	PFL_4615	PFL_4613	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.621
PFL_4616	PFL_4614	PFL_4616	PFL_4614	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.998
PFL_4616	PFL_4615	PFL_4616	PFL_4615	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.998
PFL_4616	oprB	PFL_4616	PFL_4613	Putative sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.688
PFL_5414	oprB	PFL_5414	PFL_4613	Conserved hypothetical protein.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.675
PFL_5414	oprB2	PFL_5414	PFL_4915	Conserved hypothetical protein.	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	0.648
oprB	PFL_3366	PFL_4613	PFL_3366	Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.	Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.	0.667

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About